larry#
- scdiffeq.datasets._larry_in_vitro.larry(data_dir: str = '/home/runner/work/scDiffEq/scDiffEq/docs/source', variant: str | None = None, filter_genes: bool = True, reduce_dimensions: bool = True, cytotrace: bool = True, force_download: bool = False) AnnData[source]#
LARRY in vitro dataset
- Parameters:
data_dir – str, default=os.getcwd() Path to the directory where the data will be saved.
variant – Optional[str], default=None Dataset variant to download. None (default) downloads the full biology-rich dataset. “fate_prediction” downloads the original fate prediction dataset.
filter_genes – bool, default=True Whether to filter genes.
reduce_dimensions – bool, default=True Whether to reduce dimensions.
cytotrace – bool, default=True Whether to annotate LARRY with pre-computed CytoTRACE annotations.
force_download – bool, default=False Whether to force download the data.
- Returns:
Preprocessed AnnData object.
- Return type: