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  • Quickstart
  • Installation
  • API Reference
  • Tutorials
  • Reproducibility
  • Dependencies
  • GitHub
  • Twitter

Section Navigation

  • Model (sdq.scDiffEq)
    • scDiffEq
    • Lightning models (sdq.core.lightning_models)
      • LightningSDE
      • LightningODE
      • LightningSDE_FixedPotential
      • LightningODE_FixedPotential
      • LightningSDE_FixedPotential_RegularizedVelocityRatio
      • LightningODE_FixedPotential_RegularizedVelocityRatio
      • BaseLightningDiffEq
      • BatchProcessor
  • Data I/O (sdq.io)
    • sdq.io.read_h5ad
    • sdq.io.read_pickle
    • sdq.io.write_pickle
  • Datasets (sdq.datasets)
    • larry
    • human_hematopoiesis
  • Tools (sdq.tl)
    • annotate_cell_state
    • annotate_cell_fate
    • kNN
    • simulate
      • Simulation
    • perturb
  • API Reference
  • scDiffEq

Model (sdq.scDiffEq)#

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Model (sdq.scDiffEq)

sdq.scDiffEq

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Model (sdq.core.lightning_models)

LightningSDE

LightningODE

LightningSDE_FixedPotential

LightningODE_FixedPotential

LightningSDE_FixedPotential_RegularizedVelocityRatio

LightningODE_FixedPotential_RegularizedVelocityRatio

BaseLightningDiffEq

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Core supporting constructs (sdq.core)

BatchProcessor

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API Reference

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scDiffEq

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