API Reference

Here you will find documentation of the scDiffEq API. This covers both the model as well as the supporting function modules.

Model

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Model (sdq.scDiffEq) modules

sdq.scDiffEq

sdq.core.lightning_models

sdq.core

Data I/O

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Data I/O (sdq.io) modules

sdq.io.read_h5ad

sdq.io.read_pickle

sdq.io.write_pickle

sdq.io.Project

sdq.io.Version

sdq.io.Checkpoint

sdq.io.HParams

Datasets

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Datasets (sdq.datasets) modules

sdq.datasets.pancreas

sdq.datasets.human_hematopoiesis

Plotting

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Plotting (sdq.pl) modules

sdq.pl.velocity_stream

Tools

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Tools (sdq.tl) modules

sdq.tl.annotate_cell_state

sdq.tl.annotate_cell_fate

sdq.tl.kNN

sdq.tl.simulate

sdq.tl.perturb