`sdq.io.read_h5ad`#

scdiffeq.io._data._read_h5ad.read_h5ad(h5ad_path: str, silent: bool = False, annotate_path: bool = True) → AnnData[source]#

Read an AnnData object from a path to a .h5ad file.

Parameters:

h5ad_path (str) – Path to .h5ad file.
silent (bool) – If True, the AnnData object is not printed.
annotate_path (bool) – If True, adds the h5ad_path to the read AnnData object in adata.uns[‘h5ad_path’].

Returns:

anndata.AnnData: The (annotated) single-cell data matrix of shape n_obs × n_vars. Rows correspond to cells and columns to genes.

For more information, visit: https://anndata.readthedocs.io/en/latest/.

Notes

Documentation for AnnData: https://anndata.readthedocs.io/en/stable/