annotate_cell_fate

scdiffeq.tools._annotate_cell_fate.annotate_cell_fate(adata_sim: AnnData, state_key: str = 'state', key_added: str = 'fate', time_key: str = 't', sim_key: str = 'sim', silent: bool = False, *args, **kwargs) → None

Annotate the fate of a simulated cell trajectory, given annotated states.

Parameters:

adata_sim (AnnData) –

Simulated AnnData object.

state_key (str)

Key in adata_sim.obs corresponding to annotated states.

key_added (str)

Key added to adata_sim.obs to indicate the fate of each trajectory. Default: “fate”

time_key (str)

Key in adata_sim.obs corresponding to time.

sim_key (str)

Key in adata_sim.obs corresponding to each individual simulation.

silent (bool)

If True, suppresses informational messages.

Return type:

None